l(2)07214, Sec61, DSec61β
Predicted to enable guanyl-nucleotide exchange factor activity. Involved in negative regulation of autophagy. Located in endomembrane system. Is expressed in several structures, including adult head; anlage in statu nascendi; embryonic/larval midgut primordium; epidermis; and gut section. Orthologous to human SEC61B (SEC61 translocon subunit beta).
The gene Sec61 beta subunit is referred to in FlyBase by the symbol Dmel\Sec61β (CG10130, FBgn0010638). It is a protein_coding_gene from Dmel. It has one annotated transcript and one polypeptide. Gene sequence location is 2R:14618771..14619681. Its molecular function is described by: guanyl-nucleotide exchange factor activity. It is involved in the biological process described with: post-translational protein targeting to membrane, translocation; negative regulation of autophagy; SRP-dependent cotranslational protein targeting to membrane, translocation; intracellular protein transport. 20 alleles are reported. The phenotypes of these alleles manifest in: cellular anatomical structure; larval integumentary system; prepupal integumentary system; cell periphery; segment of leg. The phenotypic classes of alleles include: majority die during embryonic stage; increased mortality during development; phenotype; increased mortality. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in adult female stages.
Please see the JBrowse view of Dmel\Sec61β for information on other features
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AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.50
There is only one protein coding transcript and one polypeptide associated with this gene
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Sec61β using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: anlage in statu nascendi
Comment: anlage in statu nascendi
Comment: reported as procephalic ectoderm anlage in statu nascendi
Comment: reported as procephalic ectoderm anlage in statu nascendi
Comment: reported as procephalic ectoderm anlage in statu nascendi
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as salivary gland primordium
JBrowse - Visual display of RNA-Seq signals
View Dmel\Sec61β in JBrowseThe gene 'ToolKit' contains a set of key genetic reagents that can be used to study a gene. A single reagent for each category is chosen based on frequency of usage, and stock availability. Click "See all" to view all the reagents for the category.
Category | Common alleles (# stocks) |
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Classical and Insertion Alleles | |
Loss of function allele | |
Amorphic allele | |
Fluorescently-tagged allele | |
Transgenic Constructs | |
UAS RNAi | |
UAS wild-type cDNA | |
Untagged genomic rescue | |
Fluorescently-tagged genomic rescue | |
Aberrations | |
Deficiency | |
Duplication |
2-72
2-76.2
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
polyclonal
Sec61β mutants die at the end of embryogenesis with a severe defect in the deposition of cuticle proteins.
The autosomal "FLP-DFS" technique (using the P{ovoD1-18} P{FRT(whs)} P{hsFLP} chromosomes) has been used to identify the specific maternal effect phenotype for the zygotic lethal mutation.
Source for merge of: Sec61β CG10130
Source for merge of Sec61β CG10130 was sequence comparison ( date:000401 ).